CALL US

+86 17838360708

ProMEX a mass spectral reference database for plant

ProMEX a mass spectral reference database for plant

ProMEX – a mass spectral reference database for plant ...

Jun 06, 2012  INTRODUCTION. Mass spectrometry (MS)-based proteomics is the most widely used high-throughput technology for identification, quantification, and characterization of

get price

ProMEX – a mass spectral reference database for plant ...

Jun 06, 2012  ProMEX – a mass spectral reference database for plant proteomics. The ProMEX database is one of the main collection of annotated tryptic peptides in plant

get price

ProMEX – a mass spectral reference database for plant ...

ProMEX – a mass spectral reference database for plant proteomics Author: Volker Egelhofer Subject: The ProMEX database is one of the main collection of annotated

get price

ProMEX – a mass spectral reference database for Plant ...

Jun 06, 2012  Among relevant proteomics resources, the ProMEX database is a useful tool which provides mass spectral information for cell type-specific proteomes in many

get price

ProMEX: a mass spectral reference database for proteins ...

Jun 23, 2007  ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. Hummel J(1), Niemann M, Wienkoop S, Schulze W, Steinhauser D, Selbig

get price

ProMEX – a mass spectral reference database for plant ...

MINI REVIEW ARTICLE published: 06 June 2012 doi: 10.3389/fpls.2012.00125 ProMEX – a mass spectral reference database for plant proteomics Stefanie Wienkoop, Christiana

get price

Promex - univie.ac.at

Feb 12, 2013  Promex 2.12/2013. Promex is a mass spectral reference database. The database consists of tryptic peptide fragmentation mass spectra derived from

get price

ProMEX – a mass spectral reference database for plant ...

ProMEX – a mass spectral reference database for plant proteomics Author: Volker Egelhofer Subject: The ProMEX database is one of the main collection of annotated tryptic peptides in plant proteomics. Keywords: proteomics, mass spectrometry, bioinformatics, functional databases, plant biology, system biology Created Date: 6/4/2012 7:02:37 PM

get price

ProMEX – a mass spectral reference database for Plant ...

Jun 06, 2012  Among relevant proteomics resources, the ProMEX database is a useful tool which provides mass spectral information for cell type-specific proteomes in many plant

get price

ProMEX – a mass spectral reference database for plant ...

Academic research paper on topic "ProMEX – a mass spectral reference database for plant proteomics" frontieré^i. IN PLANT PROTEOMICSI. ProMEX - a mass spectral reference database for Plant Proteomics. Stefanie Wienkoop, Christiana Staudinger, Wolfgang Hoehenwarter, Wolfram Weckwerth and Volker Egelhofer.

get price

ProMEX: a mass spectral reference database for proteins ...

BMC Bioinformatics (2007-06-01) . ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites

get price

(PDF) ProMEX: A mass spectral reference database for ...

ProMEX: A mass spectral reference database for proteins and protein phosphorylation sites.pdf Available via license: CC BY 2.0 Content may be subject to copyright.

get price

ProMEX: a mass spectral reference database for proteins ...

The database is further connected to annotation and classification services via BioMoby. Conclusion: The ProMEX protein/ peptide database represents a mass spectral reference library with the capability of matching unknown samples for protein identification. The database allows text searches based on metadata such as experimental information of ...

get price

ProMEX protein mass spectral library BiŌkeanós

A mass spectral library consisting of tryptic peptide product ion spectra generated by liquid chromatography coupled to ion trap mass spectrometry (LC-ITMS). Developed using samples derived from Arabidopsis thaliana and Medicago truncatula. The database serves as a reference and can be used for protein identification in uncharacterized samples.

get price

DataBases - MASC Proteomics Subcommittee

ProMEX. ProMEX is a mass spectral library, consisting of tryptic peptide product ion spectra from protein samples of Arabidopsis thaliana , Medicago truncatula , Chlamydomonas reinhardtii, Tomato and Potato. The database serves as a reference and can be

get price

From Proteomics to Systems Biology: MAPA, MASS WESTERN ...

Aug 22, 2013  Wienkoop S, Staudinger C, Hoehenwarter W et al (2012) ProMEX: a mass spectral reference database for plant proteomics. Front Plant Sci 3:125 PubMed CrossRef Google Scholar 10.

get price

dbPPT: Database of Phospho-sites in Plants

Aug 01, 2021  ProMEX : a mass spectral reference database for proteins and protein phosphorylation sites, containing 30,483 spectra of 12,119 different Proteins and 25,311 different peptides to date (Wienkoop, et al., 2012). 3.

get price

PPDB, the Plant Proteomics Database at Cornell Nucleic ...

Oct 02, 2008  PPDB is a unique resource for the plant community and complements other plant proteomics resources, such as the plant mass spectral reference database Promex , SUBA for Arabidopsis protein localization , as well as databases specialized in other organelles, such as peroxisomes or phosphopeptides . Direct links at the protein locus level to the ...

get price

DataBases - MASC Proteomics Subcommittee

ProMEX. ProMEX is a mass spectral library, consisting of tryptic peptide product ion spectra from protein samples of Arabidopsis thaliana , Medicago truncatula , Chlamydomonas reinhardtii, Tomato and Potato. The database serves as a reference and can be

get price

PPDB, the Plant Proteomics Database at Cornell Nucleic ...

Oct 02, 2008  PPDB is a unique resource for the plant community and complements other plant proteomics resources, such as the plant mass spectral reference database Promex , SUBA for Arabidopsis protein localization , as well as databases specialized in other organelles, such as peroxisomes or phosphopeptides . Direct links at the protein locus level to the ...

get price

dbPPT: Database of Phospho-sites in Plants

Aug 01, 2021  ProMEX : a mass spectral reference database for proteins and protein phosphorylation sites, containing 30,483 spectra of 12,119 different Proteins and 25,311 different peptides to date (Wienkoop, et al., 2012). 3.

get price

Databases - univie.ac.at

ProMEX. ProMEX is a mass spectral library consisting of tryptic peptide product ion spectra generated by liquid chromatography coupled to ion trap mass spectrometry (LC-ITMS) and was developed using protein and phosphoprotein samples derived fromArabidopsis thaliana, Chlamydomonas reinhardtii, Medicago truncatula, Solanum tuberosum, Solanum lycopersicum L. and others.

get price

From proteomics to systems biology: MAPA, MASS WESTERN ...

The ProMEX protein/peptide database represents a mass spectral reference library with the capability of matching unknown samples for protein identification. ... and transcript information and may ...

get price

PPDB, the Plant Proteomics Database at Cornell

for the plant community and complements other plant proteomics resources, such as the plant mass spectral reference database Promex (4), SUBA for Arabidopsis protein localization (5), as well as databases specialized in other organelles, such as peroxisomes (6) or phospho-peptides (7). Direct links at the protein locus level to the

get price

Plant Proteomics: From Genome Sequencing to Proteome ...

Aug 22, 2013  Hummel J, Niemann M, Wienkoop S et al (2007) ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8:216 PubMed CrossRef Google Scholar 9.

get price

The UniProtKB/Swiss-Prot knowledgebase and its Plant ...

Apr 13, 2009  Mapping to Plant Ontology terms or between UniProtKB pathways and GO terms is underway. UniProt will integrate the GO consortium in the forthcoming months and active GO annotation will be implemented in UniProtKB by mid 2009. ... Mass spectrometry data ... ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites ...

get price

PhosPhAt : a database of phosphorylation sites in ...

Nov 04, 2007  External links to published references at PubMed and MS/MS data at the ProMex mass spectral library ( 17) are also shown. The second table, the prediction table (TAIR7pS), contains pSer predictions for the entire Arabidopsis annotated proteome comprising 31 921 proteins (release 7 from25 April 2007) available from The Arabidopsis Information ...

get price

Stefanie Wienkoop - Academia

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites more. by Stefanie Wienkoop. Publisher: Springer Nature Publication Date: 2007 Publication Name: BMC Bioinformatics. ... ProMEX–a mass spectral reference database for plant proteomics more.

get price

Proteome coverage of the model plant Arabidopsis thaliana ...

Feb 21, 2013  The recent aggregation of large-scale shotgun proteomics data in the model plant Arabidopsis (MASCP Gator) has for the first time provided a comprehensive collection of matched mass spectral data from a diverse array of experimental conditions, instrumentation and data analysis. ... ProMEX—a mass spectral reference database for plant ...

get price

(PDF) PPDB, the plant proteomics database at Cornell ...

In more complicated mixtures, for example, whole cell lysates, data-dependent acquisition incompletely samples among the peptide ions present rather than acquiring tandem mass spectra for all ions ...

get price

(PDF) MASCP Gator: An overview of the Arabidopsis ...

Oct 23, 2013  a mass spectral reference database. ... ProMEX—a mass spectral reference. ... and profile protein abundance has greatly expanded the utilization of mass spectrometry in biology. The plant ...

get price

(PDF) Metabolomics and Proteomics-Assisted Genome ...

All gathered proteomics data are available in In this article, we combine multi-level profiling the plant proteomics mass spectral reference library methods with bioinformatic and theoretical modeling ProMEX (Hummel et al. 2007). approaches to characterize the molecular repertoire of By combining EST with proteomics data and in silico C ...

get price